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MISA-web: a web server for microsatellite prediction.

ABSTRACT: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging.We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis.MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code.scholz@ipk-gatersleben.de.

SUBMITTER: Beier S 

PROVIDER: S-EPMC5870701 | biostudies-literature | 2017 Aug

REPOSITORIES: biostudies-literature

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MISA-web: a web server for microsatellite prediction.

Beier Sebastian S   Thiel Thomas T   Münch Thomas T   Scholz Uwe U   Mascher Martin M  

Bioinformatics (Oxford, England) 20170801 16

<h4>Motivation</h4>Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging.<h4>Results</h4>We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis.<h4>Avai  ...[more]

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