UpSetR: an R package for the visualization of intersecting sets and their properties.

ABSTRACT:

Motivation

Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed.

Results

We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties.

Availability and implementation

UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/ .

Contact

[e-mail].

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Conway JR 

PROVIDER: S-EPMC5870712 | biostudies-literature | 2017 Sep

REPOSITORIES: biostudies-literature