Transcriptomic Profiling of Fruit Development in Black Raspberry Rubus coreanus.

ABSTRACT: The wild Rubus species R. coreanus, which is widely distributed in southwest China, shows great promise as a genetic resource for breeding. One of its outstanding properties is adaptation to high temperature and humidity. To facilitate its use in selection and breeding programs, we assembled de novo 179,738,287 R. coreanus reads (125 bp in length) generated by RNA sequencing from fruits at three representative developmental stages. We also used the recently released draft genome of R. occidentalis to perform reference-guided assembly. We inferred a final 95,845-transcript reference for R. coreanus. Of these genetic resources, 66,597 (69.5%) were annotated. Based on these results, we carried out a comprehensive analysis of diffe

SUBMITTER: Chen Q 

PROVIDER: S-EPMC5901860 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature