A time-varying group sparse additive model for genome-wide association studies of dynamic complex traits.

ABSTRACT:

Motivation

Despite the widespread popularity of genome-wide association studies (GWAS) for genetic mapping of complex traits, most existing GWAS methodologies are still limited to the use of static phenotypes measured at a single time point. In this work, we propose a new method for association mapping that considers dynamic phenotypes measured at a sequence of time points. Our approach relies on the use of Time-Varying Group Sparse Additive Models (TV-GroupSpAM) for high-dimensional, functional regression.

Results

This new model detects a sparse set of genomic loci that are associated with trait dynamics, and demonstrates increased statistical power over existing methods. We evaluate our method via experiments on synthetic data and perform a proof-of-concept analysis for de

SUBMITTER: Marchetti-Bowick M 

PROVIDER: S-EPMC5942717 | biostudies-literature | 2016 Oct

REPOSITORIES: biostudies-literature