Sequanix: a dynamic graphical interface for Snakemake workflows.

ABSTRACT: Summary:We designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users. Availability and implementation:Source on http://github.com/sequana/sequana, bio-containers on http://bioconda.github.io and Singularity hub (http://singularity-hub.org). Contact:[e-mail] or thomas

SUBMITTER: Desvillechabrol D 

PROVIDER: S-EPMC5972652 | biostudies-literature | 2018 Jun

REPOSITORIES: biostudies-literature