StructureMapper: a high-throughput algorithm for analyzing protein sequence locations in structural data.

ABSTRACT:

Motivation

StructureMapper is a high-throughput algorithm for automated mapping of protein primary amino sequence locations to existing three-dimensional protein structures. The algorithm is intended for facilitating easy and efficient utilization of structural information in protein characterization and proteomics. StructureMapper provides an analysis of the identified structural locations that includes surface accessibility, flexibility, protein-protein interfacing, intrinsic disorder prediction, secondary structure assignment, biological assembly information and sequence identity percentages, among other metrics.

Results

We have showcased the use of the algorithm by estimating the coverage of structural information of the human proteome, identifying critical interface res

SUBMITTER: Nurminen A 

PROVIDER: S-EPMC6022694 | biostudies-literature | 2018 Jul

REPOSITORIES: biostudies-literature