BioBakery: a meta'omic analysis environment.

ABSTRACT:

Summary

bioBakery is a meta'omic analysis environment and collection of individual software tools with the capacity to process raw shotgun sequencing data into actionable microbial community feature profiles, summary reports, and publication-ready figures. It includes a collection of pre-configured analysis modules also joined into workflows for reproducibility.

Availability and implementation

bioBakery (http://huttenhower.sph.harvard.edu/biobakery) is publicly available for local installation as individual modules and as a virtual machine image. Each individual module has been developed to perform a particular task (e.g. quantitative taxonomic profiling or statistical analysis), and they are provided with source code, tutorials, demonstration data, and validation results; t

SUBMITTER: McIver LJ 

PROVIDER: S-EPMC6030947 | biostudies-literature | 2018 Apr

REPOSITORIES: biostudies-literature