XiSPEC: web-based visualization, analysis and sharing of proteomics data.

ABSTRACT: We present xiSPEC, a standard compliant, next-generation web-based spectrum viewer for visualizing, analyzing and sharing mass spectrometry data. Peptide-spectrum matches from standard proteomics and cross-linking experiments are supported. xiSPEC is to date the only browser-based tool supporting the standardized file formats mzML and mzIdentML defined by the proteomics standards initiative. Users can either upload data directly or select files from the PRIDE data repository as input. xiSPEC allows users to save and share their datasets publicly or password protected for providing access to collaborators or readers and reviewers of manuscripts. The identification table features advanced interaction controls and spectra are presented in three interconnected views: (i) annotated mass spectru

SUBMITTER: Kolbowski L 

PROVIDER: S-EPMC6030980 | biostudies-literature | 2018 Jul

REPOSITORIES: biostudies-literature