Genetic diversity and selection signatures of the beef 'Charolais de Cuba' breed.

ABSTRACT: In this study, we used BovineSNP50 Genotyping BeadChip data to estimate the structure, putative ancestral origin as well as to identify regions with selective sweeps that may have had an important role in the adaptation to tropical conditions of the 'Charolais de Cuba' (CHCU) breed. According to a principal component analysis, CHCU samples cluster together with taurine breeds with an estimated 93% of taurus ancestral alleles. Despite the short period since importation, we detected differentiation (Fst = 0.049) between the French Charolaise (CHA) and CHCU. However, CHA breed was the closest breed to CHCU followed by other hybrids breed with a clear CHA origin. Linkage disequilibrium (r²) decay tends to be lower in CHCU compared to CHA probably due to a less intense artificial sel

SUBMITTER: Rodriguez-Valera Y 

PROVIDER: S-EPMC6054659 | biostudies-literature | 2018 Jul

REPOSITORIES: biostudies-literature