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Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L).

ABSTRACT: Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (Zea mays) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq difference profiles. The data repository for the sequence data is the NCBI SRA, BioProject Accession PRJNA445708.

SUBMITTER: Turpin ZM 

PROVIDER: S-EPMC6117953 | biostudies-literature | 2018 Oct

REPOSITORIES: biostudies-literature

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Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (<i>Zea mays</i> L).

Turpin Zachary M ZM   Vera Daniel L DL   Savadel Savannah D SD   Lung Pei-Yau PY   Wear Emily E EE   Mickelson-Young Leigh L   Thompson William F WF   Hanley-Bowdoin Linda L   Dennis Jonathan H JH   Zhang Jinfeng J   Bass Hank W HW  

Data in brief 20180810

Presented here are data from Next-Generation Sequencing of differential micrococcal nuclease digestions of formaldehyde-crosslinked chromatin in selected tissues of maize (<i>Zea mays</i>) inbred line B73. Supplemental materials include a wet-bench protocol for making DNS-seq libraries, the DNS-seq data processing pipeline for producing genome browser tracks. This report also includes the peak-calling pipeline using the iSeg algorithm to segment positive and negative peaks from the DNS-seq diffe  ...[more]

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