Targeted Gene Sequencing in Children with Crohn's Disease and Their Parents: Implications for Missing Heritability.

ABSTRACT: Crohn's disease is a complex genetic trait characterized by chronic relapsing intestinal inflammation. Genome wide association studies (GWAS) have identified more than 170 loci associated with the disease, accounting for ∼14% of the disease variance. We hypothesized that rare genetic variation in GWAS positional candidates also contribute to disease pathogenesis. We performed targeted, massively-parallel sequencing of 101 genes in 205 children with Crohn's disease, including 179 parent-child trios and 200 controls, both of European ancestry. We used the gene burden test implemented in VAAST and estimated effect sizes using logistic regression and meta-analyses. We identified three genes with nominally significant p-values: NOD2, RTKN2, and MGAT3 Only NOD2 was si

SUBMITTER: Chen JS 

PROVIDER: S-EPMC6118318 | biostudies-literature | 2018 Aug

REPOSITORIES: biostudies-literature