AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.

ABSTRACT:

Background

The genome-wide expression profile of genes in different tissues/cell types and developmental stages is a vital component of many functional genomic studies. Transcriptome data obtained by RNA-sequencing (RNA-Seq) is often deposited in public databases that are made available via data portals. Data visualization is one of the first steps in assessment and hypothesis generation. However, these databases do not typically include visualization tools and establishing one is not trivial for users who are not computational experts. This, as well as the various formats in which data is commonly deposited, makes the processes of data access, sharing and utility more difficult. Our goal was to provide a simple and user-friendly repository that meets these needs for data-sets from

SUBMITTER: Robinson AJ 

PROVIDER: S-EPMC6146512 | biostudies-literature | 2018 Sep

REPOSITORIES: biostudies-literature