Comparison of the modified unbounded penalty and the LASSO to select predictive genes of response to chemotherapy in breast cancer.

ABSTRACT: Covariate selection is a fundamental step when building sparse prediction models in order to avoid overfitting and to gain a better interpretation of the classifier without losing its predictive accuracy. In practice the LASSO regression of Tibshirani, which penalizes the likelihood of the model by the L1 norm of the regression coefficients, has become the gold-standard to reach these objectives. Recently Lee and Oh developed a novel random-effect covariate selection method called the modified unbounded penalty (MUB) regression, whose penalization function can equal minus infinity at 0 in order to produce very sparse models. We sought to compare the predictive accuracy and the number of covariates selected by these two methods in several high-dimensional datasets, consisting in genes expre

SUBMITTER: Collignon O 

PROVIDER: S-EPMC6166949 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature