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Programming molecular topologies from single-stranded nucleic acids.

ABSTRACT: Molecular knots represent one of the most extraordinary topological structures in biological polymers. Creating highly knotted nanostructures with well-defined and sophisticated geometries and topologies remains challenging. Here, we demonstrate a general strategy to design and construct highly knotted nucleic acid nanostructures, each weaved from a single-stranded DNA or RNA chain by hierarchical folding in a prescribed order. Sets of DNA and RNA knots of two- or three-dimensional shapes have been designed and constructed (ranging from 1700 to 7500 nucleotides), and they exhibit complex topological features, with high crossing numbers (from 9 up to 57). These single-stranded DNA/RNA knots can be replicated and amplified enzymatically in vitro and in vivo. This work establishes a general platform for constructing nucleic acid nanostructures with complex molecular topologies.

SUBMITTER: Qi X

PROVIDER: S-EPMC6214983 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature

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Programming molecular topologies from single-stranded nucleic acids.

Qi Xiaodong X Zhang Fei F Su Zhaoming Z Jiang Shuoxing S Han Dongran D Ding Baoquan B Liu Yan Y Chiu Wah W Yin Peng P Yan Hao H

Nature communications 20181102 1

Molecular knots represent one of the most extraordinary topological structures in biological polymers. Creating highly knotted nanostructures with well-defined and sophisticated geometries and topologies remains challenging. Here, we demonstrate a general strategy to design and construct highly knotted nucleic acid nanostructures, each weaved from a single-stranded DNA or RNA chain by hierarchical folding in a prescribed order. Sets of DNA and RNA knots of two- or three-dimensional shapes have b ...[more]

PMID: 30389935

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