Transcriptomic time-series analysis of early development in olive from germinated embryos to juvenile tree.

ABSTRACT:

Background

Despite its relevance, almost no studies account for the genetic control in the early stages of tree development, i.e. from germination on. This study seeks to make a quite complete transcriptome for olive development and to elucidate the dynamic regulation of the transcriptomic response during the early-juvenile period by RNAseq time-series expression analysis. The transcriptome was made from 342,049,597 paired-end reads of 101 bp in length. The assembled transcriptome contained 109,125 unigenes (N50 = 1490 bp, average length = 839).

Results

The time-series-expression analysis showed that, embryonic structures present at the first month after the induction of germination reached a more differentiated state in two-month-old seedlings. Once the plants were between

SUBMITTER: Jimenez-Ruiz J 

PROVIDER: S-EPMC6245754 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature