Porcine single nucleotide polymorphisms and their functional effect: an update.

ABSTRACT:

Objective

To aid in the development of a comprehensive list of functional variants in the swine genome, single nucleotide polymorphisms (SNP) were identified from whole genome sequence of 240 pigs. Interim data from 72 animals in this study was published in 2017. This communication extends our previous work not only by utilizing genomic sequence from additional animals, but also by the use of the newly released Sscrofa 11.1 reference genome.

Results

A total of 26,850,263 high confidence SNP were identified, including 19,015,267 reported in our previously published results. Variation was detected in the coding sequence or untranslated regions (UTR) of 78% of the genes in the porcine genome: 1729 loss-of-function variants were predicted in 1162 genes, 12,686 genes contained 64

SUBMITTER: Keel BN 

PROVIDER: S-EPMC6280461 | biostudies-literature | 2018 Dec

REPOSITORIES: biostudies-literature