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Single-Phase PacBio De Novo Assembly of the Genome of the Chytrid Fungus Batrachochytrium dendrobatidis, a Pathogen of Amphibia.

ABSTRACT: Here, we present an updated genome assembly of the diploid chytrid fungus Batrachochytrium dendrobatidis strain RTP6. This strain is part of the global panzootic lineage (BdGPL) and was isolated in Dunedin, New Zealand. The assembly was generated using PacBio long-read and Illumina short-read data, allowing for the accurate phasing of heterozygosities.

SUBMITTER: Sumpter N 

PROVIDER: S-EPMC6284735 | biostudies-literature | 2018 Nov

REPOSITORIES: biostudies-literature

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Single-Phase PacBio <i>De Novo</i> Assembly of the Genome of the Chytrid Fungus <i>Batrachochytrium dendrobatidis,</i> a Pathogen of Amphibia.

Sumpter Nicholas N   Butler Margi M   Poulter Russell R  

Microbiology resource announcements 20181129 21

Here, we present an updated genome assembly of the diploid chytrid fungus Batrachochytrium dendrobatidis strain RTP6. This strain is part of the global panzootic lineage (<i>Bd</i>GPL) and was isolated in Dunedin, New Zealand. The assembly was generated using PacBio long-read and Illumina short-read data, allowing for the accurate phasing of heterozygosities. ...[more]

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