The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.

ABSTRACT:

Summary

In recent years, major initiatives such as the International Human Epigenome Consortium have generated thousands of high-quality genome-wide datasets for a large variety of assays and cell types. This data can be used as a reference to assess whether the signal from a user-provided dataset corresponds to its expected experiment, as well as to help reveal unexpected biological associations. We have developed the epiGenomic Efficient Correlator (epiGeEC) tool to enable genome-wide comparisons of very large numbers of datasets. A public Galaxy implementation of epiGeEC allows comparison of user datasets with thousands of public datasets in a few minutes.

Availability and implementation

The source code is available at https://bitbucket.org/labjacquespe/epigeec and the Ga

SUBMITTER: Laperle J 

PROVIDER: S-EPMC6378939 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature