Dataset Information

Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

ABSTRACT: The prevalence of chronic kidney disease (CKD) is rising worldwide and 10-15% of the global population currently suffers from CKD and its complications. Given the increasing prevalence of CKD there is an urgent need to find novel treatment options. The American black bear (Ursus americanus) copes with months of lowered kidney function and metabolism during hibernation without the devastating effects on metabolism and other consequences observed in humans. In a biomimetic approach to better understand kidney adaptations and physiology in hibernating black bears, we established a high-quality genome assembly. Subsequent RNA-Seq analysis of kidneys comparing gene expression profiles in black bears entering (late fall) and emerging (early spring) from hibernation identified 169 protein-coding genes that were differentially expressed. Of these, 101 genes were downregulated and 68 genes were upregulated after hibernation. Fold changes ranged from 1.8-fold downregulation (RTN4RL2) to 2.4-fold upregulation (CISH). Most notable was the upregulation of cytokine suppression genes (SOCS2, CISH, and SERPINC1) and the lack of increased expression of cytokines and genes involved in inflammation. The identification of these differences in gene expression in the black bear kidney may provide new insights in the prevention and treatment of CKD.

SUBMITTER: Srivastava A

PROVIDER: S-EPMC6379037 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature

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Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

Srivastava Anuj A Kumar Sarsani Vishal V Fiddes Ian I Sheehan Susan M SM Seger Rita L RL Barter Mary E ME Neptune-Bear Selena S Lindqvist Charlotte C Korstanje Ron R

DNA research : an international journal for rapid publication of reports on genes and genomes 20190201 1

The prevalence of chronic kidney disease (CKD) is rising worldwide and 10-15% of the global population currently suffers from CKD and its complications. Given the increasing prevalence of CKD there is an urgent need to find novel treatment options. The American black bear (Ursus americanus) copes with months of lowered kidney function and metabolism during hibernation without the devastating effects on metabolism and other consequences observed in humans. In a biomimetic approach to better under ...[more]

PMID: 30395234

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Project description:Free-ranging large carnivores are involved in human-wildlife conflicts which can result in economic costs. Understanding factors that lead to human-wildlife conflicts is important to mitigate these negative effects and facilitate human-carnivore coexistence. We used a human-American black bear (Ursus americanus) conflict database maintained by the New York State Department of Environmental Conservation to determine whether drought, conflicts within the Adirondack and Catskill Parks as compared to outside of these parks, mild severity (Class 3) conflicts early in the year (April–June), and bear harvest in the previous year (as an index of bear abundance), were associated with greater frequency of high or moderate severity (Class 1–2) conflicts later in the year (July–September) across New York, USA. During 2006–2019, we obtained 3,782 mild severity conflict records early in the year, and 1,042 high or moderate severity records later in the year. We found that a one standard deviation increase in the cumulative precipitation difference from mean early in the year (about 7.59 cm) coincided with a 20% decrease in conflicts, and that Wildlife Management Units (WMUs) within the parks were predicted to have 5.61 times as many high or moderate severity conflicts as WMUs outside the parks. We also found that a one standard deviation increase in the frequency of mild severity conflicts (equivalent to 5.68 conflicts) early in the year coincided with an increase in the frequency of high or moderate severity conflicts in a WMU later in the year by 49%, while a one standard deviation increase in the bear abundance index in the previous year (0.14 bears/10 km2) coincided with a 23% increase in high or moderate severity conflicts. To reduce the frequency and severity of conflicts to facilitate human-black bear coexistence, we recommend the following measures to be taken in place consistently and build over time in local communities: (i) further reducing black bear access to anthropogenic foods and other attractants, (ii) non-lethal measures including bear-resistant waste management, (iii) electric fencing, and (iv) modifying placement or configuration of field crops.

Dataset Information

Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

Publications

Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

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