PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.

ABSTRACT: The number of protein structures is increasing due to the individual initiatives and rapid development of structure determination techniques. Structure-based sequence alignments of distantly related proteins enable the investigation of structural, evolutionary and functional relationships between proteins and their domains leading to their common evolutionary origin. Protein Alignments organized as Structural Superfamilies (PASS2) is a database that provides such alignments of members of protein domain superfamilies of known structure and with less than 40% sequence identity. PASS2 has been continuously updated in accordance to Structural Classification of Proteins (SCOP), and now Structural Classification of Proteins - extended (SCOPe). The current update directly corresponds to SCOPe 2.0

SUBMITTER: Ghosh P 

PROVIDER: S-EPMC6395796 | biostudies-literature | 2019 Jan

REPOSITORIES: biostudies-literature