CODA-ML: context-specific biological knowledge representation for systemic physiology analysis.

ABSTRACT:

Background

Computational analysis of complex diseases involving multiple organs requires the integration of multiple different models into a unified model. Different models are often constructed in heterogeneous formats. Thus, the integration of the models requires a standard language format that can effectively represent essential biological information. However, the previously introduced formats have limitations that prevent from adequately representing essential biological information, particularly specifications of bio-molecules and biological contexts.

Results

We defined an XML-based markup language called context-oriented directed association markup language (CODA-ML), which better represents essential biological information. The CODA-ML has two major strengths in desi

SUBMITTER: Kwon M 

PROVIDER: S-EPMC6538558 | biostudies-literature | 2019 May

REPOSITORIES: biostudies-literature