ClickGene: an open cloud-based platform for big pan-cancer data genome-wide association study, visualization and exploration.

ABSTRACT: Tremendous amount of whole-genome sequencing data have been provided by large consortium projects such as TCGA (The Cancer Genome Atlas), COSMIC and so on, which creates incredible opportunities for functional gene research and cancer associated mechanism uncovering. While the existing web servers are valuable and widely used, many whole genome analysis functions urgently needed by experimental biologists are still not adequately addressed. A cloud-based platform, named CG (ClickGene), therefore, was developed for DIY analyzing of user's private in-house data or public genome data without any requirement of software installation or system configuration. CG platform provides key interactive and customized functions including Bee-swarm plot, linear regression analyses, Mountain plot, Directi

SUBMITTER: Bi JH 

PROVIDER: S-EPMC6595587 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature