FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files.

ABSTRACT:

Background

Exploration and processing of FASTQ files are the first steps in state-of-the-art data analysis workflows of Next Generation Sequencing (NGS) platforms. The large amount of data generated by these technologies has put a challenge in terms of rapid analysis and visualization of sequencing information. Recent integration of the R data analysis platform with web visual frameworks has stimulated the development of user-friendly, powerful, and dynamic NGS data analysis applications.

Results

This paper presents FastqCleaner, a Bioconductor visual application for both quality-control (QC) and pre-processing of FASTQ files. The interface shows diagnostic information for the input and output data and allows to select a series of filtering and trimming operations in an inte

SUBMITTER: Roser LG 

PROVIDER: S-EPMC6599294 | biostudies-literature | 2019 Jun

REPOSITORIES: biostudies-literature