Soybean-VCF2Genomes: a database to identify the closest accession in soybean germplasm collection.

ABSTRACT:

Background

The development of next generation sequencer (NGS) and the analytical methods allowed the researchers to profile their samples more precisely and easier than before. Especially for agriculture, the certification of the genomic background of their plant materials would be important for the reliability of seed market and stable yield as well as for quarantine procedure. However, the analysis of NGS data is still difficult for non-computational researchers or breeders to verify their samples because majority of current softwares for NGS analysis require users to access unfamiliar Linux environment.

Main body

Here, we developed a web-application, "Soybean-VCF2Genomes", http://pgl.gnu.ac.kr/soy_vcf2genome/ to map single sample variant call format (VCF) file against kno

SUBMITTER: Ha J 

PROVIDER: S-EPMC6652137 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature