Active Site Architecture and Reaction Mechanism Determination of Cold Adapted ?-d-galactosidase from Arthrobacter sp. 32cB.

ABSTRACT: Arth?DG is a dimeric, cold-adapted ?-d-galactosidase that exhibits high hydrolytic and transglycosylation activity. A series of crystal structures of its wild form, as well as its Arth?DG_E441Q mutein complexes with ligands were obtained in order to describe the mode of its action. The Arth?DG_E441Q mutein is an inactive form of the enzyme designed to enable observation of enzyme interaction with its substrate. The resulting three-dimensional structures of complexes: Arth?DG_E441Q/LACs and Arth?DG/IPTG (ligand bound in shallow mode) and structures of complexes Arth?DG_E441Q/LACd, Arth?DG/ONPG (ligands bound in deep mode), and galactose Arth?DG/GAL and their analysis enabled structural characterization of the hydrolysis reaction mechanism. Furthermore, comparative analysis with mesophilic analogs revealed the most striking differences in catalysis mechanisms. The key role in substrate transfer from shallow to deep binding mode involves rotation of the F581 side chain. It is worth noting that the 10-aa loop restricting access to the active site in mesophilic GH2 ?DGs, in Arth?DG is moved outward. This facilitates access of substrate to active site. Such a permanent exposure of the entrance to the active site may be a key factor for improved turnover rate of the cold adapted enzyme and thus a structural feature related to its cold adaptation.

SUBMITTER: Rutkiewicz M 

PROVIDER: S-EPMC6747455 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature