Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.

ABSTRACT: Protein networks have become a popular tool for analyzing and visualizing the often long lists of proteins or genes obtained from proteomics and other high-throughput technologies. One of the most popular sources of such networks is the STRING database, which provides protein networks for more than 2000 organisms, including both physical interactions from experimental data and functional associations from curated pathways, automatic text mining, and prediction methods. However, its web interface is mainly intended for inspection of small networks and their underlying evidence. The Cytoscape software, on the other hand, is much better suited for working with large networks and offers greater flexibility in terms of network analysis, import, and visualization of additional data. To include b

SUBMITTER: Doncheva NT 

PROVIDER: S-EPMC6800166 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature