Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants.

ABSTRACT:

Summary

Hayai-Annotation Plants is a browser-based interface for an ultra-fast and accurate functional gene annotation system for plant species using R. The pipeline combines the sequence-similarity searches, using USEARCH against UniProtKB (taxonomy Embryophyta), with a functional annotation step. Hayai-Annotation Plants provides five layers of annotation: i) protein name; ii) gene ontology terms consisting of its three main domains (Biological Process, Molecular Function and Cellular Component); iii) enzyme commission number; iv) protein existence level; and v) evidence type. It implements a new algorithm that gives priority to protein existence level to propagate GO and EC information and annotated Arabidopsis thaliana representative peptide sequences (Araport11) within 5 min at

SUBMITTER: Ghelfi A 

PROVIDER: S-EPMC6821316 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature