INDRA-IPM: interactive pathway modeling using natural language with automated assembly.

ABSTRACT:

Summary

INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats.

Availability and implementation

INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000.

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Todorov PV 

PROVIDER: S-EPMC6821420 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature