RegBase: whole genome base-wise aggregation and functional prediction for human non-coding regulatory variants.

ABSTRACT: Predicting the functional or pathogenic regulatory variants in the human non-coding genome facilitates the interpretation of disease causation. While numerous prediction methods are available, their performance is inconsistent or restricted to specific tasks, which raises the demand of developing comprehensive integration for those methods. Here, we compile whole genome base-wise aggregations, regBase, that incorporate largest prediction scores. Building on different assumptions of causality, we train three composite models to score functional, pathogenic and cancer driver non-coding regulatory variants respectively. We demonstrate the superior and stable performance of our models using independent benchmarks and show great success to fine-map causal regulatory variants on specific locus o

SUBMITTER: Zhang S 

PROVIDER: S-EPMC6868349 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature