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GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining.

ABSTRACT: Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline microbiome data analyses.

SUBMITTER: Tong WM 

PROVIDER: S-EPMC6940285 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature

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GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining.

Tong W M WM   Chan Yuki Y  

Microbiology resource announcements 20200102 1

Amplicon sequencing of the 16S rRNA gene is commonly performed for the assessment and comparison of microbiomes. Here, we introduce GenePiper, an open-source R Shiny application that provides an easy-to-use interface, a wide range of analytical methods, and optimized graphical outputs for offline microbiome data analyses. ...[more]