ShinyOmics: collaborative exploration of omics-data.

ABSTRACT:

Background

Omics-profiling is a collection of increasingly prominent approaches that result in large-scale biological datasets, for instance capturing an organism's behavior and response in an environment. It can be daunting to manually analyze and interpret such large datasets without some programming experience. Additionally, with increasing amounts of data; management, storage and sharing challenges arise.

Results

Here, we present ShinyOmics, a web-based application that allows rapid collaborative exploration of omics-data. By using Tn-Seq, RNA-Seq, microarray and proteomics datasets from two human pathogens, we exemplify several conclusions that can be drawn from a rich dataset. We identify a protease and several chaperone proteins upregulated under aminoglycoside stress

SUBMITTER: Surujon D 

PROVIDER: S-EPMC6969480 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature