PANEV: an R package for a pathway-based network visualization.

ABSTRACT: BACKGROUND:During the last decade, with the aim to solve the challenge of post-genomic and transcriptomic data mining, a plethora of tools have been developed to create, edit and analyze metabolic pathways. In particular, when a complex phenomenon is considered, the creation of a network of multiple interconnected pathways of interest could be useful to investigate the underlying biology and ultimately identify functional candidate genes affecting the trait under investigation. RESULTS:PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to n) of interconnected upstream and downstream pathways. The network graph visualization helps to inter

SUBMITTER: Palombo V 

PROVIDER: S-EPMC7006390 | biostudies-literature | 2020 Feb

REPOSITORIES: biostudies-literature