GsmPlot: a web server to visualize epigenome data in NCBI.

ABSTRACT: BACKGROUND:Epigenetic regulation is essential in regulating gene expression across a variety of biological processes. Many high-throughput sequencing technologies have been widely used to generate epigenetic data, such as histone modification, transcription factor binding sites, DNA modifications, chromatin accessibility, and etc. A large scale of epigenetic data is stored in NCBI Gene Expression Omnibus (GEO). However, it is a great challenge to reanalyze these large scale and complex data, especially for researchers who do not specialize in bioinformatics skills or do not have access to expensive computational infrastructure. RESULTS:GsmPlot can simply accept GSM IDs to automatically download NCBI data or can accept user's private bigwig files as input to plot the concerned data on promo

SUBMITTER: Li J 

PROVIDER: S-EPMC7017537 | biostudies-literature | 2020 Feb

REPOSITORIES: biostudies-literature