A transcriptional landscape of 28 porcine tissues obtained by super deepSAGE sequencing.

ABSTRACT:

Background

Gene expression regulators identified in transcriptome profiling experiments may serve as ideal targets for genetic manipulations in farm animals.

Results

In this study, we developed a gene expression profile of 76,000+ unique transcripts for 224 porcine samples from 28 tissues collected from 32 animals using Super deepSAGE technology. Excellent sequencing depth was achieved for each multiplexed library, and replicated samples from the same tissues clustered together, demonstrating the high quality of Super deepSAGE data. Comparison with previous research indicated that our results not only have good reproducibility but also have greatly extended the coverage of the sample types as well as the number of genes. Clustering analysis revealed ten groups of genes showi

SUBMITTER: Huang T 

PROVIDER: S-EPMC7071599 | biostudies-literature | 2020 Mar

REPOSITORIES: biostudies-literature