Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.

ABSTRACT:

Background

Proteogenomics integrates genomics, transcriptomics, and mass spectrometry (MS)-based proteomics data to identify novel protein sequences arising from gene and transcript sequence variants. Proteogenomic data analysis requires integration of disparate 'omic software tools, as well as customized tools to view and interpret results. The flexible Galaxy platform has proven valuable for proteogenomic data analysis. Here, we describe a novel Multi-omics Visualization Platform (MVP) for organizing, visualizing, and exploring proteogenomic results, adding a critically needed tool for data exploration and interpretation.

Findings

MVP is built as an HTML Galaxy plug-in, primarily based on JavaScript. Via the Galaxy API, MVP uses SQLite databases as input-a custom data type

SUBMITTER: McGowan T 

PROVIDER: S-EPMC7102281 | biostudies-literature | 2020 Apr

REPOSITORIES: biostudies-literature