MBKbase for rice: an integrated omics knowledgebase for molecular breeding in rice.

ABSTRACT: To date, large amounts of genomic and phenotypic data have been accumulated in the fields of crop genetics and genomic research, and the data are increasing very quickly. However, the bottleneck to using big data in breeding is integrating the data and developing tools for revealing the relationship between genotypes and phenotypes. Here, we report a rice sub-database of an integrated omics knowledgebase (MBKbase-rice, www.mbkbase.org/rice), which integrates rice germplasm information, multiple reference genomes with a united set of gene loci, population sequencing data, phenotypic data, known alleles and gene expression data. In addition to basic data search functions, MBKbase provides advanced web tools for genotype searches at the population level and for visually displaying the relatio

SUBMITTER: Peng H 

PROVIDER: S-EPMC7145604 | biostudies-literature | 2020 Jan

REPOSITORIES: biostudies-literature