Leaf tissue specific transcriptome sequence and de novo assembly datasets of Asiatic mangrove Rhizophora mucronata Lam.

ABSTRACT: Transcriptome data is beneficial to explore molecular mechanisms of extreme adaptations in non- model organisms like mangroves. In this data article, five major datasets and two data sub sets of a salt secreting mangrove, Rhizophora mucronata Lam. were described. A combination of Illumina HiSeq 2500, Trinity, BLAST X, Bowtie 2 and BLAST 2GO was used for RNA Seq, de novo assembly, transcript annotation, gene expression estimation and gene ontology annotation respectively. The RNA Sequence (Read 1 and Read 2) in Sequence Read Archive amounting to 46,366,348 paired end raw reads is the first data set made open for de novo or comparative transcript assembly. Assembled sequences of 93960 gene transcripts constitute the second data set in Transcriptome Shotgun Assembly. The gene/protein annotati

SUBMITTER: Meera SP 

PROVIDER: S-EPMC7262405 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature