Culicidae-centric metabarcoding through targeted use of D2 ribosomal DNA primers.

ABSTRACT: A practical limitation to many metabarcoding initiatives is that sampling methods tend to collect many non-target taxa, which become "amplicon noise" that can saturate Next Generation Sequencing results and lead to both financial and resource inefficiencies. An available molecular tool that can significantly decrease these non-target amplicons and decrease the need for pre-DNA-extraction sorting of bycatch is the design of PCR primers tailored to the taxa under investigation. We assessed whether the D2 extension segment of the 28S ribosomal operon can limit this shortcoming within the context of mosquito (Culicidae) monitoring. We designed PCR primers that are fully conserved across mosquitos and exclude from amplification most other taxa likely to be collected with current sampling appara

SUBMITTER: Pedro PM 

PROVIDER: S-EPMC7315618 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature