MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization.

ABSTRACT: MusiteDeep is an online resource providing a deep-learning framework for protein post-translational modification (PTM) site prediction and visualization. The predictor only uses protein sequences as input and no complex features are needed, which results in a real-time prediction for a large number of proteins. It takes less than three minutes to predict for 1000 sequences per PTM type. The output is presented at the amino acid level for the user-selected PTM types. The framework has been benchmarked and has demonstrated competitive performance in PTM site predictions by other researchers. In this webserver, we updated the previous framework by utilizing more advanced ensemble techniques, and providing prediction and visualization for multiple PTMs simultaneously for users to analyze poten

SUBMITTER: Wang D 

PROVIDER: S-EPMC7319475 | biostudies-literature | 2020 Jul

REPOSITORIES: biostudies-literature