Alona: a web server for single-cell RNA-seq analysis.

ABSTRACT:

Summary

Single-cell RNA sequencing (scRNA-seq) is a technology to measure gene expression in single cells. It has enabled discovery of new cell types and established cell type atlases of tissues and organs. The widespread adoption of scRNA-seq has created a need for user-friendly software for data analysis. We have developed a web server, alona that incorporates several of the most popular single-cell analysis algorithms into a flexible pipeline. alona can perform quality filtering, normalization, batch correction, clustering, cell type annotation and differential gene expression analysis. Data are visualized in the web browser using an interface based on JavaScript, allowing the user to query genes of interest and visualize the cluster structure. alona accepts a compressed gene ex

SUBMITTER: Franzen O 

PROVIDER: S-EPMC7320629 | biostudies-literature | 2020 Jun

REPOSITORIES: biostudies-literature