Complete genome assembly data of paenibacillus sp. RUD330, a hypothetical symbiont of euglena gracilis.

ABSTRACT: An unknown bacterial strain was detected in the cytostome of Euglena gracilis and on the cell surface of Euglena gracilis using transmission electron microscopy. To identify the unknown bacterium and its function, we performed isolation experiments. Here we present the genome sequence of the isolate that was determined to be Paenibacillus sp. The genome of the bacterium was sequenced four times using Illumina technology with pair-end reads, Illumina technology with mate pair reads (inserts 3-4 and 6-8 Kb), and Nanopore technology with long reads (tens of thousands of nucleotides). Assemblies based on Illumina reads including mate-pair reads could not resolve issues caused by long tandem copies of rRNA, other tandem repeats, and extremely GC-rich regions (90-100%). Only

SUBMITTER: Shtratnikova VY 

PROVIDER: S-EPMC7408339 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature