RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data.

ABSTRACT:

Background

Ribosome profiling has been widely used for studies of translation under a large variety of cellular and physiological contexts. Many of these studies have greatly benefitted from a series of data-mining tools designed for dissection of the translatome from different aspects. However, as the studies of translation advance quickly, the current toolbox still falls in short, and more specialized tools are in urgent need for deeper and more efficient mining of the important and new features of the translation landscapes.

Results

Here, we present RiboMiner, a bioinformatics toolset for mining of multi-dimensional features of the translatome with ribosome profiling data. RiboMiner performs extensive quality assessment of the data and integrates a spectrum of tools for v

SUBMITTER: Li F 

PROVIDER: S-EPMC7430821 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature