Browse
Submit Data
Databases
API
Help

Dataset Information

49 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome sequence of Coenonympha amaryllis and monophyly of Satyrinae (Lepidoptera: Nymphalidae).

ABSTRACT: The complete mitochondrial genome (mitogenome) of a Satirid species Coenonympha amaryllis was assembled and annotated. The mitogenome is a DNA molecule of 15125 bp, and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs, 2 rRNAs, and 1 A-T rich region. The nucleotide composition biases toward A and T is 79.4% of the entirety, which is a typical structure of Lepidopterans. All PCGs started with ATN, except cox1, which started with CGA, 8 PCGs stop with TAN and 5 genes exhibited incomplete stop codon. Phylogenetic analysis revealed that Satyrinae is a monophyletic group and Coenonympha (C. amaryllis) as sister of the genus Triphysa (T. phryne).

SUBMITTER: Zhou L

PROVIDER: S-EPMC7510812 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome sequence of Coenonympha amaryllis and monophyly of Satyrinae (Lepidoptera: Nymphalidae).

Zhou Lin L Yang Chen C Zhai Qing Q Zhang Yalin Y

Mitochondrial DNA. Part B, Resources 20200228 2

The complete mitochondrial genome (mitogenome) of a Satirid species Coenonympha amaryllis was assembled and annotated. The mitogenome is a DNA molecule of 15125 bp, and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs, 2 rRNAs, and 1 A-T rich region. The nucleotide composition biases toward A and T is 79.4% of the entirety, which is a typical structure of Lepidopterans. All PCGs started with ATN, except cox1, which started with CGA, 8 PCGs stop with TAN and 5 genes exhi ...[more]

PMID: 33366920

Similar Datasets

The mitochondrial genome sequence of a satyrid butterfly, Lethe confuse (Lepidoptera: Nymphalidae: Satyrinae).

Project description:The nearly complete mitochondrial genome (mitogenome) of Lethe confuse was sequenced and analyzed. This mitogenome is 14,945 bp in size and encodes 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes. The most common start codon is ATN (ATA, ATG, and ATT), and the most common termination codon is TAA. In addition, three PCGs have incomplete termination codon T. The overall nucleotide composition is 38.0% of A, 7.8% of G, 42.4% of T, and 11.8% of C. The data will increase the basic information of Satyrinae phylogenetic research and can help to better understand the phylogenetic status of L. confuse in Nymphalidae.

| S-EPMC7782262 | biostudies-literature

Complete mitochondrial genome of Lasiommata deidamia and its phylogenetic implication to subfamily Satyrinae (Lepidoptera: Nymphalidae).

Project description:Lasiommata deidamia Eversmann taxonomically belongs to lepidopteran family Nymphalidae Rafinesque, 1815. The Complete mitochondrial genome (mitogenome) of the insect had been sequenced, with 15,244 bp of total length that has 81.12% AT content and contains a typical set of genes (13 protein-coding genes (PCGs), 22 tRNA genes and 2 rRNA genes) and a 417 bp AT-rich region. Another, 11 intergenic spacers (139 bp in total) and 16 overlaps (175 bp in total) have been founded. The longest interval is located between trnGln and nad2 while the maximum overlap is between trnHis and nad4. All PCG genes are started with the ATN codons and stop at TAA codons except cox1 which uses CGA as the initiation codon. No tandem repeat has been found in the AT-rich region. The phylogenetic tree inferred with Bayesian Inference based on all the 13 protein sequences of 45 mitogeomes reveals the phylogenetic relationships of the taxa in the subfamily Styrinae is (((Satyrini + Ypthimini) + (Amathusiini + Elymniini)) + Melanitini) and that within tribe Satyrini is ((((Lethina + Parargina) + Mycalesina) + Coenonymphina) +(Satyrina + (Melanargiina + Maniolina))).

| S-EPMC8451643 | biostudies-literature

Complete mitochondrial genome of Mycalesis intermedia (Lepidoptera: Nymphalidae).

Project description:The Mycalesis intermedia belongs to Nymphalidae in Lepidoptera. We described the complete mitogenome of M. intermedia, which is typical circular duplex molecules and 15,386 bp in length, containing the standard metazoan set of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an A + T-rich region with macro-repeat sequences. All the inferred tRNA secondary structures show the common cloverleaf pattern, with the exception of trnS1(AGN) which lacks the DHU arm. The M. intermedia mitochondrial genome has the same gene order with other lepidopterans.

| S-EPMC7748658 | biostudies-literature

The complete mitochondrial genome of Apatura laverna (lepidoptera: Nymphalidae).

Project description:Apatura laverna is subordinate to Apatura Fabricius of Nymphalidae, and endemic to China. The complete mitochondrial genome of A. laverna was sequenced and analyzed in the study. The length of the complete mitogenome is 15,187 bp, including 37 genes and a control region. COI gene initiate with a CGA codon, the rest 12 genes start with typical ATN. Eleven of 13 PCGs have a complete stop codon TAN except for COII and ND4 have a single T. The phylogenetic analyses support that A. laverna has a close relationship with the clade including A. metis and A. ilia.

| S-EPMC8425737 | biostudies-literature

The complete mitochondrial genome of Aglais ladakensis (Lepidoptera: Nymphalidae: Nymphalinae).

Project description:We describe the mitogenome sequence of alpine butterfly Aglais ladakensis (Lepidoptera: Nymphalidae: Nymphalinae) collected from the Qilianshan Mountain, Gansu province, China. The molecule is 15,222 bp in length, containing 37 typical insect mitochondrial genes and one AT-rich region. All protein-coding genes (PCGs) start with ATN codons, except for COI gene with CGA, which is often found in other butterflies. In addition, seven PCGs harbor the typical stop codon TAA, whereas six PCGs terminate with TA or T. The rrnL and rrnS genes are 1316 bp and 735 bp in length, respectively. The AT-rich region is 394 bp in size and harbors several features characteristic of the lepidopterans, including the motif ATAGA followed by a 19 bp poly-T stretch and a microsatellite-like (TA)8 element. Phylogenetic analysis shows that the Qinghai-Tibet Plateau (QTP) distributed A. ladakensis of this study is closely related to the A. milberti, which is the only Aglais species that occurs in the alpine caves of North America.

| S-EPMC7748854 | biostudies-literature

The complete mitochondrial genomes of two Japanese endemic Satyrinae butterflies, Neope goschkevitschii and Lethe sicelis (Lepidoptera, Nymphalidae).

Project description:Neope goschkevitschii and Lethe sicelis are endemic Satyrinae butterflies in mainland Japan, which belongs to the Palearctic realm. In this study, we determined the mitochondrial genomes of these two species. The total length of the mitochondrial genome was 15,286 bp and 15,196 bp for N. goschkevitschii and L. sicelis, respectively, and both mitochondrial genomes were extremely AT-rich. Phylogenetic analysis revealed each of these species was closely related to a member of the same genus, respectively.

| S-EPMC7510593 | biostudies-literature

Characterization of complete mitochondrial genome of Polyura narcaeus (Lepidoptera: Nymphalidae: Charaxinae).

Project description:The complete mitochondrial genome of Polyura narcaeus (Hewitson, 1854) (Lepidoptera: Nymphalidae: Charaxinae) was sequenced in the study. The circular genome is 15,319 bp in size and includes 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a non-coding AT-rich region. The base composition of the whole mitogenome is 39.15% A, 42.08% T, 11.18% C and 7.59% G, showing a strong AT bias. The characteristics of encoding PCGs, rRNAs and tRNAs, as well as the non-coding intergenic spacers and overlapping sequences are nearly the same with other known butterflies. The AT-rich region also contains several features characteristic of the typical butterflies. Phylogenetic analysis distinctly showed that the family Nymphalidae was a monophyletic group, and that the newly determined Polyura narcaeus of this study was firstly sister to Polyura nepenthes, then they were clustered with Polyura arja.

| S-EPMC8128195 | biostudies-literature

The complete mitochondrial genome of comma, polygonia c-aureum (Lepidoptera: Nymphalidae: Nymphalinae).

Project description:The mitochondrial genome (mitogenome) of Polygonia c-aureum (Lepidoptera: Nymphalidae: Nymphalinae) is determined to be 15,209 bp in length and shows AT bias (80.6%). Similar to other butterflies, it contains 37 typical mitochondrial genes and one AT-rich region (D-loop). All protein-coding genes (PCGs) started with ATN, except for cox1 gene with CGA(R), which is often found in other butterflies, and seven PCGs harbour the typical stop codon TAA, whereas cox1, cox2, nad3, nad5, nad4 and nad1 end with a single T. The rrnL and rrnS genes are 1332 bp and 773 bp in length, respectively. The 342 bp AT-rich region contains non-repetitive sequences, but harbour several features common to the lepidopterans, including the motif ATAGA followed by a 19-bp poly-T stretch and a microsatellite-like (TA)8 element preceded by the ATTTA motif. The complete mitogenome sequence provided here would be useful for further understanding the taxonomy and phylogeny of Nymphalinae.

| S-EPMC7799567 | biostudies-literature

Characterization of the complete mitochondrial genome of the Hypolimnas misippus Linnaeus 1764 (Lepidoptera: nymphalidae)

Project description:Abstract In this study, we sequenced the complete mitochondrial genome (mitogenome) of Hypolimnas misippus Linnaeus 1764, which is 15,283 bp in length, containing 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and an adenine (A) + thymine (T)-rich (D-loop) region. The overall GC level is 19.8%. The phylogenetic position of H. misippus was evaluated using 48 previously published complete mitogenomes, and the results reveals that H. misippus is most closely related to H.bolina.

| S-EPMC10453977 | biostudies-literature

Complete mitochondrial genome of Lelecella limenitoides (Lepidoptera: Nymphalidae: Apaturinae) and phylogenetic implication.

Project description:The length of Lelecella limenitoides complete mitogenome was 15,203 bp and contained the typical gene arrangement, base composition, and codon usage found in other related species. The overall base composition exhibited obvious anti-G (7.5%) and AT bias (81.6%). The initiation codons of all PCGs were typical ATN (ATA/ATG/ATT), and the termination codons were TAA, TAG, or incomplete stop codon T-. All tRNAs could be folded into typical cloverleaf secondary structures, except tRNASer (AGN). Phylogenetic analysis showed that L. limenitoides was clustered with the clade of Sasakia, Euripus, and Apatura.

| S-EPMC7510825 | biostudies-literature