MetaSanity: an integrated microbial genome evaluation and annotation pipeline.

ABSTRACT:

Summary

As the importance of microbiome research continues to become more prevalent and essential to understanding a wide variety of ecosystems (e.g. marine, built, host associated, etc.), there is a need for researchers to be able to perform highly reproducible and quality analysis of microbial genomes. MetaSanity incorporates analyses from 11 existing and widely used genome evaluation and annotation suites into a single, distributable workflow, thereby decreasing the workload of microbiologists by allowing for a flexible, expansive data analysis pipeline. MetaSanity has been designed to provide separate, reproducible workflows that (i) can determine the overall quality of a microbial genome, while providing a putative phylogenetic assignment, and (ii) can assign structural and fu

SUBMITTER: Neely CJ 

PROVIDER: S-EPMC7520038 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature