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FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research.


ABSTRACT: The FaceBase Consortium was established by the National Institute of Dental and Craniofacial Research in 2009 as a 'big data' resource for the craniofacial research community. Over the past decade, researchers have deposited hundreds of annotated and curated datasets on both normal and disordered craniofacial development in FaceBase, all freely available to the research community on the FaceBase Hub website. The Hub has developed numerous visualization and analysis tools designed to promote integration of multidisciplinary data while remaining dedicated to the FAIR principles of data management (findability, accessibility, interoperability and reusability) and providing a faceted search infrastructure for locating desired data efficiently. Summaries of the datasets generated by the FaceBase projects from 2014 to 2019 are provided here. FaceBase 3 now welcomes contributions of data on craniofacial and dental development in humans, model organisms and cell lines. Collectively, the FaceBase Consortium, along with other NIH-supported data resources, provide a continuously growing, dynamic and current resource for the scientific community while improving data reproducibility and fulfilling data sharing requirements.

SUBMITTER: Samuels BD 

PROVIDER: S-EPMC7522026 | biostudies-literature | 2020 Sep

REPOSITORIES: biostudies-literature

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FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research.

Samuels Bridget D BD   Aho Robert R   Brinkley James F JF   Bugacov Alejandro A   Feingold Eleanor E   Fisher Shannon S   Gonzalez-Reiche Ana S AS   Hacia Joseph G JG   Hallgrimsson Benedikt B   Hansen Karissa K   Harris Matthew P MP   Ho Thach-Vu TV   Holmes Greg G   Hooper Joan E JE   Jabs Ethylin Wang EW   Jones Kenneth L KL   Kesselman Carl C   Klein Ophir D OD   Leslie Elizabeth J EJ   Li Hong H   Liao Eric C EC   Long Hannah H   Lu Na N   Maas Richard L RL   Marazita Mary L ML   Mohammed Jaaved J   Prescott Sara S   Schuler Robert R   Selleri Licia L   Spritz Richard A RA   Swigut Tomek T   van Bakel Harm H   Visel Axel A   Welsh Ian I   Williams Cristina C   Williams Trevor J TJ   Wysocka Joanna J   Yuan Yuan Y   Chai Yang Y  

Development (Cambridge, England) 20200921 18


The FaceBase Consortium was established by the National Institute of Dental and Craniofacial Research in 2009 as a 'big data' resource for the craniofacial research community. Over the past decade, researchers have deposited hundreds of annotated and curated datasets on both normal and disordered craniofacial development in FaceBase, all freely available to the research community on the FaceBase Hub website. The Hub has developed numerous visualization and analysis tools designed to promote inte  ...[more]

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