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Argininamide-type neuropeptide Y Y1 receptor antagonists: the nature of N ω-carbamoyl substituents determines Y1R binding mode and affinity.


ABSTRACT: The recently resolved crystal structure of the neuropeptide Y Y1 receptor (Y1R), co-crystallized with the high-affinity (pK i: 10.11), argininamide-type Y1R antagonist UR-MK299 (2), revealed that the N ω-carbamoyl substituent (van der Waals volume: 139 Å3) is deeply buried in the receptor, occupying a hydrophobic pocket. We synthesized and characterized a series of argininamides, structurally related to 2. Y1R affinity decreased with increasing size of the carbamoyl residue (minimal pK i: 5.67). Exceeding a critical size of the substituent (van der Waals volume: 212 Å3), the ligands bound in an inverted mode with the carbamoyl side chain located at the surface of the receptor, as suggested by induced-fit docking and MD simulations.

SUBMITTER: Buschmann J 

PROVIDER: S-EPMC7536821 | biostudies-literature | 2020 Feb

REPOSITORIES: biostudies-literature

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Argininamide-type neuropeptide Y Y<sub>1</sub> receptor antagonists: the nature of <i>N</i> <sup>ω</sup>-carbamoyl substituents determines Y<sub>1</sub>R binding mode and affinity.

Buschmann Jonas J   Seiler Theresa T   Bernhardt Günther G   Keller Max M   Wifling David D  

RSC medicinal chemistry 20200120 2


The recently resolved crystal structure of the neuropeptide Y Y<sub>1</sub> receptor (Y<sub>1</sub>R), co-crystallized with the high-affinity (p<i>K</i> <sub>i</sub>: 10.11), argininamide-type Y<sub>1</sub>R antagonist UR-MK299 (<b>2</b>), revealed that the <i>N</i> <sup>ω</sup>-carbamoyl substituent (van der Waals volume: 139 Å<sup>3</sup>) is deeply buried in the receptor, occupying a hydrophobic pocket. We synthesized and characterized a series of argininamides, structurally related to <b>2</  ...[more]

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