R-chie: a web server and R package for visualizing cis and trans RNA-RNA, RNA-DNA and DNA-DNA interactions.

ABSTRACT: Interactions between biological entities are key to understanding their potential functional roles. Three fields of research have recently made particular progress: the investigation of transRNA-RNA and RNA-DNA transcriptome interactions and of trans DNA-DNA genome interactions. We now have both experimental and computational methods for examining these interactions in vivo and on a transcriptome- and genome-wide scale, respectively. Often, key insights can be gained by visually inspecting figures that manage to combine different sources of evidence and quantitative information. We here present R-chie, a web server and R package for visualizing cis and transRNA-RNA, RNA-DNA and DNA-DNA interactions. For this, we have completely revised and significantly extended an earlier version of R-chi

SUBMITTER: Tsybulskyi V 

PROVIDER: S-EPMC7544209 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature