Skin Pigmentation Differences between Mongolian, Korean, and Uzbekistan Ancient Human DNA Samples.

ABSTRACT:

Background

This study reports the use of real-time PCR to identify the SNP rs1545397 in the intron region on the OCA2 gene from ancient and degraded DNA isolated from ancient human bones from Mongolia, Korea, and Uzbekistan. This SNP is a marker for skin pigmentation. LightCycler-based probes (HybProbes) were designed. A LightCycler (version 2.0) system was used for the real-time PCR.

Results

The results of the real-time PCRs of three different genotypes of SNP rs1545397 were compared with those of the direct sequencing. Melting curve analysis was used for genotype determination. Three genotypes were distinguished: the homozygous T (T/T) SNP type formed a distinct melting peak at 53.3 ± 0.14°C, the homozygous A (A/A) SNP type formed a distinct melting peak at 57.8 ± 0.12°C,

SUBMITTER: Bazarragchaa M 

PROVIDER: S-EPMC7559177 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature