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Emergence of Avian coronavirus genotype GI-11 in Colombia.

ABSTRACT: Avian coronavirus (AvCoV/IBV) is a virus with high morbidity, which can cause respiratory, digestive, renal, and reproductive diseases in chickens. Molecular detection and sequencing are the main tool for identification and classification of AvCoV. Thirty-six samples were collected in three broiler farms from different regions in Colombia, due to mortality increase; ten samples were positive using RT-qPCR targeted to the 5' UTR of AvCoV, and one sample was positive and had its partial S gene sequenced. Phylogenetic analysis revealed that this strain belongs to the GI-11 lineage, similar to the Brazilian cluster. Several lineages have already been described in Colombia but, to the best of our knowledge, this is the first time that GI-11 has been detected in this country, which suggests that this subtype may be more widespread in South America than previously thought.

SUBMITTER: Santana-Clavijo NF

PROVIDER: S-EPMC7586380 | biostudies-literature | 2021 Mar

REPOSITORIES: biostudies-literature

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Emergence of Avian coronavirus genotype GI-11 in Colombia.

Santana-Clavijo Nelson F NF Brandão Paulo E PE

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 20201026 1

Avian coronavirus (AvCoV/IBV) is a virus with high morbidity, which can cause respiratory, digestive, renal, and reproductive diseases in chickens. Molecular detection and sequencing are the main tool for identification and classification of AvCoV. Thirty-six samples were collected in three broiler farms from different regions in Colombia, due to mortality increase; ten samples were positive using RT-qPCR targeted to the 5' UTR of AvCoV, and one sample was positive and had its partial S gene seq ...[more]

PMID: 33104974

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