A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
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ABSTRACT:
SUBMITTER: Wilkinson E
PROVIDER: S-EPMC7613315 | biostudies-literature | 2021 Oct
REPOSITORIES: biostudies-literature
Publications
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
Wilkinson Eduan E Giovanetti Marta M Tegally Houriiyah H San James E JE Lessells Richard R Cuadros Diego D Martin Darren P DP Rasmussen David A DA Zekri Abdel-Rahman N AN Sangare Abdoul K AK Ouedraogo Abdoul-Salam AS Sesay Abdul K AK Priscilla Abechi A Kemi Adedotun-Sulaiman AS Olubusuyi Adewunmi M AM Oluwapelumi Adeyemi O O AOO Hammami Adnène A Amuri Adrienne A AA Sayed Ahmad A Ouma Ahmed E O AEO Elargoubi Aida A Ajayi Nnennaya A NA Victoria Ajogbasile F AF Kazeem Akano A George Akpede A Trotter Alexander J AJ Yahaya Ali A AA Keita Alpha K AK Diallo Amadou A Kone Amadou A Souissi Amal A Chtourou Amel A Gutierrez Ana V AV Page Andrew J AJ Vinze Anika A Iranzadeh Arash A Lambisia Arnold A Ismail Arshad A Rosemary Audu A Sylverken Augustina A Femi Ayoade A Ibrahimi Azeddine A Marycelin Baba B Oderinde Bamidele S BS Bolajoko Bankole B Dhaala Beatrice B Herring Belinda L BL Njanpop-Lafourcade Berthe-Marie BM Kleinhans Bronwyn B Kleinhans Bronwyn B McInnis Bronwyn B Tegomoh Bryan B Brook Cara C Pratt Catherine B CB Scheepers Cathrine C Akoua-Koffi Chantal G CG Agoti Charles N CN Peyrefitte Christophe C Daubenberger Claudia C Morang'a Collins M CM Nokes D James DJ Amoako Daniel G DG Bugembe Daniel L DL Park Danny D Baker David D Doolabh Deelan D Ssemwanga Deogratius D Tshiabuila Derek D Bassirou Diarra D Amuzu Dominic S Y DSY Goedhals Dominique D Omuoyo Donwilliams O DO Maruapula Dorcas D Foster-Nyarko Ebenezer E Lusamaki Eddy K EK Simulundu Edgar E Ong'era Edidah M EM Ngabana Edith N EN Shumba Edwin E El Fahime Elmostafa E Lokilo Emmanuel E Mukantwari Enatha E Philomena Eromon E Belarbi Essia E Simon-Loriere Etienne E Anoh Etilé A EA Leendertz Fabian F Ajili Faida F Enoch Fakayode O FO Wasfi Fares F Abdelmoula Fatma F Mosha Fausta S FS Takawira Faustinos T FT Derrar Fawzi F Bouzid Feriel F Onikepe Folarin F Adeola Fowotade F Muyembe Francisca M FM Tanser Frank F Dratibi Fred A FA Mbunsu Gabriel K GK Thilliez Gaetan G Kay Gemma L GL Githinji George G van Zyl Gert G Awandare Gordon A GA Schubert Grit G Maphalala Gugu P GP Ranaivoson Hafaliana C HC Lemriss Hajar H Anise Happi H Abe Haruka H Karray Hela H HH Nansumba Hellen H Elgahzaly Hesham A HA Gumbo Hlanai H Smeti Ibtihel I Ayed Ikhlas B IB Odia Ikponmwosa I Ben Boubaker Ilhem Boutiba IB Gaaloul Imed I Gazy Inbal I Mudau Innocent I Ssewanyana Isaac I Konstantinus Iyaloo I Lekana-Douk Jean B JB Makangara Jean-Claude C JC Tamfum Jean-Jacques M JM Heraud Jean-Michel JM Shaffer Jeffrey G JG Giandhari Jennifer J Li Jingjing J Li Jingjing J Yasuda Jiro J Mends Joana Q JQ Kiconco Jocelyn J Morobe John M JM Gyapong John O JO Okolie Johnson C JC Kayiwa John T JT Edwards Johnathan A JA Gyamfi Jones J Farah Jouali J Nakaseegu Joweria J Ngoi Joyce M JM Namulondo Joyce J Andeko Julia C JC Lutwama Julius J JJ O'Grady Justin J Siddle Katherine K Adeyemi Kayode T KT Tumedi Kefentse A KA Said Khadija M KM Hae-Young Kim K Duedu Kwabena O KO Belyamani Lahcen L Fki-Berrajah Lamia L Singh Lavanya L Martins Leonardo de O LO Tyers Lynn L Ramuth Magalutcheemee M Mastouri Maha M Aouni Mahjoub M El Hefnawi Mahmoud M Matsheka Maitshwarelo I MI Kebabonye Malebogo M Diop Mamadou M Turki Manel M Paye Marietou M Nyaga Martin M MM Mareka Mathabo M Damaris Matoke-Muhia MM Mburu Maureen W MW Mpina Maximillian M Nwando Mba M Owusu Michael M Wiley Michael R MR Youtchou Mirabeau T MT Ayekaba Mitoha O MO Abouelhoda Mohamed M Seadawy Mohamed G MG Khalifa Mohamed K MK Sekhele Mooko M Ouadghiri Mouna M Diagne Moussa M MM Mwenda Mulenga M Allam Mushal M Phan My V T MVT Abid Nabil N Touil Nadia N Rujeni Nadine N Kharrat Najla N Ismael Nalia N Dia Ndongo N Mabunda Nedio N Hsiao Nei-Yuan NY Silochi Nelson B NB Nsenga Ngoy N Gumede Nicksy N Mulder Nicola N Ndodo Nnaemeka N Razanajatovo Norosoa H NH Iguosadolo Nosamiefan N Judith Oguzie O Kingsley Ojide C OC Sylvanus Okogbenin O Peter Okokhere O Femi Oladiji O Idowu Olawoye O Testimony Olumade O Chukwuma Omoruyi E OE Ogah Onwe E OE Onwuamah Chika K CK Cyril Oshomah O Faye Ousmane O Tomori Oyewale O Ondoa Pascale P Combe Patrice P Semanda Patrick P Oluniyi Paul E PE Arnaldo Paulo P Quashie Peter K PK Dussart Philippe P Bester Phillip A PA Mbala Placide K PK Ayivor-Djanie Reuben R Njouom Richard R Phillips Richard O RO Gorman Richmond R Kingsley Robert A RA Carr Rosina A A RAA El Kabbaj Saâd S Gargouri Saba S Masmoudi Saber S Sankhe Safietou S Lawal Salako B SB Kassim Samar S Trabelsi Sameh S Metha Samar S Kammoun Sami S Lemriss Sanaâ S Agwa Sara H A SHA Calvignac-Spencer Sébastien S Schaffner Stephen F SF Doumbia Seydou S Mandanda Sheila M SM Aryeetey Sherihane S Ahmed Shymaa S SS Elhamoumi Siham S Andriamandimby Soafy S Tope Sobajo S Lekana-Douki Sonia S Prosolek Sophie S Ouangraoua Soumeya S Mundeke Steve A SA Rudder Steven S Panji Sumir S Pillay Sureshnee S Engelbrecht Susan S Nabadda Susan S Behillil Sylvie S Budiaki Sylvie L SL van der Werf Sylvie S Mashe Tapfumanei T Aanniz Tarik T Mohale Thabo T Le-Viet Thanh T Schindler Tobias T Anyaneji Ugochukwu J UJ Chinedu Ugwu U Ramphal Upasana U Jessica Uwanibe U George Uwem U Fonseca Vagner V Enouf Vincent V Gorova Vivianne V Roshdy Wael H WH Ampofo William K WK Preiser Wolfgang W Choga Wonderful T WT Bediako Yaw Y Naidoo Yeshnee Y Butera Yvan Y de Laurent Zaydah R ZR Sall Amadou A AA Rebai Ahmed A von Gottberg Anne A Kouriba Bourema B Williamson Carolyn C Bridges Daniel J DJ Chikwe Ihekweazu I Bhiman Jinal N JN Mine Madisa M Cotten Matthew M Moyo Sikhulile S Gaseitsiwe Simani S Saasa Ngonda N Sabeti Pardis C PC Kaleebu Pontiano P Tebeje Yenew K YK Tessema Sofonias K SK Happi Christian C Nkengasong John J de Oliveira Tulio T
Science (New York, N.Y.) 20210909 6566
The progression of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic in Africa has so far been heterogeneous, and the full impact is not yet well understood. In this study, we describe the genomic epidemiology using a dataset of 8746 genomes from 33 African countries and two overseas territories. We show that the epidemics in most countries were initiated by importations predominantly from Europe, which diminished after the early introduction of international travel restr ...[more]